Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123316528_123319392_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

123316528 - 123319392

Intron Length:

2865

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

TTTATTTTACTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

TTTTATTTTACT

Flanking Amino Acid:

RLADYPEYMWFLLYCEGTRF

Intron Amino Acid Position:

171

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.8

0.91

0.9

85.2

32.2

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

79.4

0.66

0.9

74.7

39.8

Minor 5ss

38.2

-1.3

3.4

49.9

46.4

Minor BPS

67.8

0.64

1.8

89.13

35.2

Associated Gene:

Gene:

AGPAT3

Ensembl Gene ID:

ENSAPLG00000009814

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044187

123309761 - 123355515

45755

ENSAPLT00000010248

123309761 - 123355922

46162