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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12332025_12333541_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12332025 - 12333541
Intron Length:
1517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTAATATCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CTTTATTTAATA
Flanking Amino Acid:
AMTRHFLRAQMPSLLLLFDN
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
83
30.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
71.3
0.48
0.9
63.3
42.5
Minor 5ss
41.3
-1
3.3
58.3
46.6
Minor BPS
69.2
0.6
1.4
75.77
36

Associated Gene:

Gene:
ARMC10
Ensembl Gene ID:
ENSAPLG00000012097
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012591
12326965 - 12334077
7113