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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12337856_12339834_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12337856 - 12339834
Intron Length:
1979

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACATTTG
5'SS Class:
major
3'SS Sequence:
TGCTCTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTTCTCATAT
Flanking Amino Acid:
HWGTFALANEYYLDPPVKLN
Intron Amino Acid Position:
426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
72.3
40
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
84.3
0.77
0.8
76.4
37.7
Minor 5ss
42.1
-0.9
3.2
57.9
46.7
Minor BPS
57
0.3
1.9
81.29
40.2

Associated Gene:

Gene:
NAPEPLD
Ensembl Gene ID:
ENSAPLG00000012076
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012581
12336682 - 12357690
21009