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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12341525_12346778_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12341525 - 12346778
Intron Length:
5254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTGCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTTCAGATATCT
Flanking Amino Acid:
DNSNVPSSKQELDKELPVLK
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
80.4
0.68
0.9
76.9
37.3
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
42.6
-0.4
2.5
71.69
44.5

Associated Gene:

Gene:
NAPEPLD
Ensembl Gene ID:
ENSAPLG00000012076
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012581
12336682 - 12357690
21009