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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123419669_123423816_R

Intron Information:

Intron Rank:
134141
Intron Class:
major
Intron Phase:
Intron Coordinates:
123419669 - 123423816
Intron Length:
4148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
GTTTGTTTATTG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
73.8
42.7
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
86.3
0.82
0.8
81.8
34.6
Minor 5ss
34.5
-1.8
3.3
49.5
46.5
Minor BPS
49
-0.2
2
59.38
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019449
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030558
123416564 - 123426448
9885