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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123423188_123423816_R

Intron Information:

Intron Rank:
134145
Intron Class:
major
Intron Phase:
Intron Coordinates:
123423188 - 123423816
Intron Length:
629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTGGAA
U12 Branch Point Sequence:
TGTCTTGGAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
73.8
42.7
Major BPS
49.9
-0
1.4
52.7
43.2
Major PPT
91.8
0.94
0.7
84.6
36
Minor 5ss
34.5
-1.8
3.3
49.5
46.5
Minor BPS
41.9
-0.5
2.2
62.21
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019449
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041187
123422738 - 123426448
3711