Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123425559_123426066_R

Intron Information:

Intron Rank:

134144

Intron Class:

major

Intron Phase:

Intron Coordinates:

123425559 - 123426066

Intron Length:

508

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCAGA

5'SS Class:

strong_major

3'SS Sequence:

CCCTCCACAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

AACTTTTTATTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.3

0.83

0.9

74.1

38.4

Major BPS

96.5

1.15

0.6

34.2

Major PPT

64.5

0.33

0.9

58.5

30.1

Minor 5ss

33.3

-1.9

2.8

45.7

Minor BPS

54.1

0.21

1.5

66.33

39.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019449

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030558

123416564 - 123426448

9885

ENSAPLT00000041187

123422738 - 123426448

3711