About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123459868_123461684_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
123459868 - 123461684
Intron Length:
1817

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTGTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAA
U12 Branch Point Sequence:
TTCTCTGTTACA
Flanking Amino Acid:
LKQQNSNLVYVCDPVMGDKW
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
75.2
40.6
Major BPS
73
0.57
1
73.6
28.6
Major PPT
84.7
0.78
0.8
79.3
32.7
Minor 5ss
36
-1.6
3.3
45.6
43.8
Minor BPS
50.5
0.01
2.3
70.65
41.9

Associated Gene:

Gene:
PDXK
Ensembl Gene ID:
ENSAPLG00000004480
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004627
123451640 - 123492321
40682
ENSAPLT00000045748
123451645 - 123489660
38016