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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12347083_12357481_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12347083 - 12357481
Intron Length:
10399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGCC
5'SS Class:
strong_major
3'SS Sequence:
AAATGTATTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
ATTAATTTAAAA
Flanking Amino Acid:
DGALQGQQHGSSPQKDMERK
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.3
35.8
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
64.5
0.33
1
60.3
44.8
Minor 5ss
32.2
-2
3.3
41.8
45.1
Minor BPS
57.6
0.23
1.6
69.15
36.3

Associated Gene:

Gene:
NAPEPLD
Ensembl Gene ID:
ENSAPLG00000012076
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012581
12336682 - 12357690
21009