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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123471633_123488048_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
123471633 - 123488048
Intron Length:
16416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGTATCC
5'SS Class:
major
3'SS Sequence:
TGTTTTGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAA
U12 Branch Point Sequence:
TGTTTTGTTACA
Flanking Amino Acid:
FSSQHCLKTEVLGFEVDTVN
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
62.3
37.3
Major BPS
67.4
0.43
1.1
67.9
36.3
Major PPT
85.4
0.8
0.9
79.9
37.7
Minor 5ss
37.9
-1.4
3.3
51.7
45
Minor BPS
48
-0.1
2.2
66.95
39.5

Associated Gene:

Gene:
PDXK
Ensembl Gene ID:
ENSAPLG00000004480
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045748
123451645 - 123489660
38016