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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123504640_123505732_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
123504640 - 123505732
Intron Length:
1093

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TGGTTTTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTGCTTTTAACC
Flanking Amino Acid:
TFGLNKNMTAEFKKTDKSIL
Intron Amino Acid Position:
696

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
84.9
26.3
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
74.1
0.54
1
70
40.3
Minor 5ss
32.1
-2
2.8
39.2
40.5
Minor BPS
71.4
0.65
1.2
75.03
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004310
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004460
123504449 - 123523168
18720