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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123505800_123506539_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
123505800 - 123506539
Intron Length:
740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTGA
5'SS Class:
major
3'SS Sequence:
TTTTGCTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTGTCTTTATTT
Flanking Amino Acid:
AISAPRASMQLNKLQSSGSK
Intron Amino Acid Position:
674

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
68.5
38.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.6
0.78
0.8
77
37.2
Minor 5ss
36.2
-1.6
3.2
47.7
47.7
Minor BPS
62.5
0.47
1.6
74.92
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004310
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004460
123504449 - 123523168
18720