Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123506687_123508240_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

123506687 - 123508240

Intron Length:

1554

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACGTAGA

5'SS Class:

strong_major

3'SS Sequence:

TCCCTCTTCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAG

U12 Branch Point Sequence:

TTGTGCTGAGAG

Flanking Amino Acid:

ETACKKSRQEESSATLAPLK

Intron Amino Acid Position:

625

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.6

0.86

0.9

78.2

38.2

Major BPS

52.2

0.06

1.6

51.1

46.3

Major PPT

79.5

0.66

0.7

71.9

32.6

Minor 5ss

-1.8

2.9

42.9

Minor BPS

43.9

-0.6

2.2

53.6

46.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004310

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004460

123504449 - 123523168

18720