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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123511185_123511987_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
123511185 - 123511987
Intron Length:
803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTTGC
5'SS Class:
major
3'SS Sequence:
TTTCCTCCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
TGTCTCTTACTT
Flanking Amino Acid:
ADDSIGPVLQFDYKAVADKL
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.2
67
39.3
Major BPS
54
0.1
1
59.7
32.6
Major PPT
78.3
0.64
0.8
74.2
29.5
Minor 5ss
43
-0.8
2.4
53.7
43.4
Minor BPS
62
0.45
1.6
77.64
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004310
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004460
123504449 - 123523168
18720