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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123512083_123512651_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
123512083 - 123512651
Intron Length:
569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TAAACATTAATA
Flanking Amino Acid:
HGNDEVLKTKADKRFSKKSA
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.8
0.83
0.8
81.9
34.3
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
60.4
0.32
1.6
68.03
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004310
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004460
123504449 - 123523168
18720