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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123519835_123522409_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
123519835 - 123522409
Intron Length:
2575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTACTGGGG
5'SS Class:
weak_major
3'SS Sequence:
TTGTGTTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTCAAT
Flanking Amino Acid:
YISGRTQRPDGGFSQDELLK
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.7
0.18
1.2
43
44.3
Major BPS
100
1.24
0.5
100
0
Major PPT
78
0.63
0.9
72.5
37.8
Minor 5ss
28.1
-2.5
3.6
37.5
47.2
Minor BPS
60.1
0.4
2.2
86.72
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004310
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004460
123504449 - 123523168
18720