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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123524951_123529342_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
123524951 - 123529342
Intron Length:
4392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TATTCTATCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CTTTATTTAATT
Flanking Amino Acid:
TFQKLDAVESSMEKKEEELE
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
0.9
75
35.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
79.1
0.66
0.9
73.4
35.4
Minor 5ss
30.7
-2.2
3.3
40.4
40
Minor BPS
71.8
0.76
1.4
84.41
36.8

Associated Gene:

Gene:
HSF2BP
Ensembl Gene ID:
ENSAPLG00000004231
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004333
123522801 - 123551798
28998