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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123529447_123533058_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
123529447 - 123533058
Intron Length:
3612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATTTG
5'SS Class:
major
3'SS Sequence:
TGTCCTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCAAAA
U12 Branch Point Sequence:
GCAACCAAAATT
Flanking Amino Acid:
AQADCMREKKEKLDLRQHLH
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
73.8
37.5
Major BPS
48.7
-0
1
53.2
28.8
Major PPT
79.8
0.67
0.9
76.7
37.4
Minor 5ss
49.3
-0
2.5
66.4
45.1
Minor BPS
45.5
-0.2
1.9
59.32
43.8

Associated Gene:

Gene:
HSF2BP
Ensembl Gene ID:
ENSAPLG00000004231
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004333
123522801 - 123551798
28998