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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123533209_123537384_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
123533209 - 123537384
Intron Length:
4176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TCCACACTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCATAAT
U12 Branch Point Sequence:
TTCTCCTCCACA
Flanking Amino Acid:
EEAVKTILGGSKAAKFFTIT
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.5
40.6
Major BPS
57.5
0.19
1.3
60.2
42.9
Major PPT
73.2
0.52
0.9
65.7
34.8
Minor 5ss
40.6
-1
2.8
48.1
41.6
Minor BPS
60.7
0.33
2
75.44
42.2

Associated Gene:

Gene:
HSF2BP
Ensembl Gene ID:
ENSAPLG00000004231
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004333
123522801 - 123551798
28998