Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123617029_123617768_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

123617029 - 123617768

Intron Length:

740

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTGCG

5'SS Class:

strong_major

3'SS Sequence:

CTTTAATCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTAAT

U12 Branch Point Sequence:

ATTTTCTTAATT

Flanking Amino Acid:

LARHRVTKTQVAIKIIDKTR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.8

0.94

0.8

74.9

35.3

Major BPS

0.92

0.9

86.2

29.1

Major PPT

80.5

0.69

0.9

74.1

35.2

Minor 5ss

27.6

-2.6

32.2

42.5

Minor BPS

85.7

1.2

0.9

93.91

26.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004813

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005000

123616876 - 123627341

10466