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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123621211_123621324_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
123621211 - 123621324
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGCTTG
5'SS Class:
major
3'SS Sequence:
TTTCTGTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
TTTCTGTTGACA
Flanking Amino Acid:
EYEGPHLDIWSLGVVLYVLV
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
65.8
42.7
Major BPS
64.9
0.37
1
67
29.8
Major PPT
79.1
0.65
1
75.8
38.2
Minor 5ss
41.6
-0.9
3
47.2
48.2
Minor BPS
57.6
0.23
2.1
75.39
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004813
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005000
123616876 - 123627341
10466
ENSAPLT00000040796
123617421 - 123627341
9921