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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123723031_123735279_F

Intron Information:

Intron Rank:
130859
Intron Class:
major
Intron Phase:
Intron Coordinates:
123723031 - 123735279
Intron Length:
12249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCCAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTATTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATATATAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
66.8
40.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.9
0.76
0.8
77.7
34.7
Minor 5ss
37.3
-1.4
3.1
44.3
44.6
Minor BPS
52.8
0.17
1.9
76.5
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020263
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045946
123722874 - 123742972
20099