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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123735145_123735279_F

Intron Information:

Intron Rank:
130856
Intron Class:
major
Intron Phase:
Intron Coordinates:
123735145 - 123735279
Intron Length:
135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTTTC
5'SS Class:
major
3'SS Sequence:
ATTTCTATTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATATATAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
76.1
34
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.9
0.76
0.8
77.7
34.7
Minor 5ss
47.2
-0.3
2.4
61.9
42.9
Minor BPS
52.8
0.17
1.9
76.5
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020263
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044534
123735117 - 123742972
7856