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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123735468_123742120_F

Intron Information:

Intron Rank:
130857
Intron Class:
major
Intron Phase:
Intron Coordinates:
123735468 - 123742120
Intron Length:
6653

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
85.2
32.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88
0.86
0.7
83.8
30.9
Minor 5ss
37.2
-1.4
3.6
57.3
47.4
Minor BPS
59.9
0.31
1.8
75.92
35.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020263
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045946
123722874 - 123742972
20099
ENSAPLT00000044534
123735117 - 123742972
7856