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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123743929_123744681_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
123743929 - 123744681
Intron Length:
753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CACCGCCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TCTCCCCCCACC
Flanking Amino Acid:
EIHGKHSERQDDHGYISREF
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
67.1
44.6
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
64.2
0.32
0.9
53.5
36.3
Minor 5ss
30.7
-2.2
3.4
40.1
46
Minor BPS
45
-0.4
2.2
61.15
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017972
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040476
123742993 - 123745947
2955