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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123768019_123768248_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
123768019 - 123768248
Intron Length:
230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTTTT
5'SS Class:
major
3'SS Sequence:
TTAATGGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TCACCCTTAATG
Flanking Amino Acid:
LGCTTNQHLARKRCCCKLAC
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
81.7
32.3
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
69.5
0.44
1
62.2
44
Minor 5ss
48.6
-0.1
2.4
67.6
43.4
Minor BPS
69.4
0.47
1.4
65.75
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030109
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044026
123767931 - 123779487
11557
ENSAPLT00000029940
123767931 - 123779480
11550
ENSAPLT00000028262
123767931 - 123779480
11550
ENSAPLT00000044976
123767972 - 123783939
15968