About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123768306_123770068_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
123768306 - 123770068
Intron Length:
1763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
AGTTTACTAACT
Flanking Amino Acid:
CSRDQPVLTFRQLDFKKNGT
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.7
81.3
32.8
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
93.4
0.98
0.7
92.3
26.6
Minor 5ss
30.9
-2.2
3.2
39.6
46.4
Minor BPS
54.9
0.23
1.9
77.24
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030109
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044976
123767972 - 123783939
15968
ENSAPLT00000044026
123767931 - 123779487
11557
ENSAPLT00000029940
123767931 - 123779480
11550
ENSAPLT00000028262
123767931 - 123779480
11550