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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123770100_123771584_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
123770100 - 123771584
Intron Length:
1485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TTTTCTATAATA
Flanking Amino Acid:
QLDFKKNGTNTIALLNIYRN
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
81.6
32.7
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
87.9
0.85
0.8
85.7
33.4
Minor 5ss
45.1
-0.5
3.4
69
41.9
Minor BPS
73.2
0.73
1.5
84.11
29.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030109
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028262
123767931 - 123779480
11550