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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123770765_123775034_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
123770765 - 123775034
Intron Length:
4270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTCCC
5'SS Class:
major
3'SS Sequence:
TTGATTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TGACTCTTGATT
Flanking Amino Acid:
NSAQTADGSHCAVSDVEMQE
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
63.1
41.5
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
85.4
0.8
0.8
80
37.5
Minor 5ss
38.4
-1.3
3
56.1
40.8
Minor BPS
63.4
0.5
1.2
73.65
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030109
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044976
123767972 - 123783939
15968
ENSAPLT00000044026
123767931 - 123779487
11557
ENSAPLT00000029940
123767931 - 123779480
11550
ENSAPLT00000045044
123767931 - 123779480
11550