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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123775805_123776691_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
123775805 - 123776691
Intron Length:
887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTGCCCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTCTCTGTAACA
Flanking Amino Acid:
DHLVGNVYVKFRREEDAEKA
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
73.9
32.9
Major BPS
84.4
0.85
1
84
34.5
Major PPT
73.3
0.52
0.8
71
35.3
Minor 5ss
35.9
-1.6
3.3
46.4
48.9
Minor BPS
65.4
0.48
2
78.6
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030109
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044026
123767931 - 123779487
11557
ENSAPLT00000029940
123767931 - 123779480
11550
ENSAPLT00000028262
123767931 - 123779480
11550
ENSAPLT00000045044
123767931 - 123779480
11550
ENSAPLT00000044976
123767972 - 123783939
15968