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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123776826_123777182_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
123776826 - 123777182
Intron Length:
357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAAAAGT
5'SS Class:
major
3'SS Sequence:
TATTCTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GGAATTTTAACT
Flanking Amino Acid:
REACCRQYEMGECTRGGFCN
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
68.8
42.1
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
83.6
0.76
0.9
81
36.2
Minor 5ss
34.1
-1.8
3.1
40.8
45.3
Minor BPS
62.6
0.47
1.3
70.93
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030109
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044026
123767931 - 123779487
11557
ENSAPLT00000029940
123767931 - 123779480
11550
ENSAPLT00000028262
123767931 - 123779480
11550
ENSAPLT00000045044
123767931 - 123779480
11550
ENSAPLT00000044976
123767972 - 123783939
15968