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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123777276_123777389_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
123777276 - 123777389
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TGGCTTATACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
TAAACTTAAATC
Flanking Amino Acid:
RRELYGRRRKNEGLQVTNLE
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
77.7
33.3
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
67.2
0.39
1
59.7
44.9
Minor 5ss
40.1
-1.1
2.9
49.5
41.1
Minor BPS
52.6
0.06
1.7
60.94
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030109
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044976
123767972 - 123783939
15968
ENSAPLT00000029940
123767931 - 123779480
11550
ENSAPLT00000028262
123767931 - 123779480
11550
ENSAPLT00000045044
123767931 - 123779480
11550