Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12378297_12379438_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12378297 - 12379438

Intron Length:

1142

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAGGCGGC

5'SS Class:

major

3'SS Sequence:

TTTTTTCTTACAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATACAT

U12 Branch Point Sequence:

TTTTTCTTACAG

Flanking Amino Acid:

LLRSPGPGNRSVHVGTGRFR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.42

1.2

55.6

43.2

Major BPS

74.9

0.62

81.3

29.9

Major PPT

96.2

1.04

0.5

91.9

19.1

Minor 5ss

34.9

-1.7

3.6

40.6

Minor BPS

63.2

0.28

1.8

72.05

40.8

Associated Gene:

Gene:

PMPCB

Ensembl Gene ID:

ENSAPLG00000012048

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017822

12378207 - 12385807

7601

ENSAPLT00000012557

12378207 - 12385867

7661