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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123793993_123794930_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
123793993 - 123794930
Intron Length:
938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATACACT
5'SS Class:
major
3'SS Sequence:
TTTTCTTTCTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
AGACTCTTATCT
Flanking Amino Acid:
MAERPLPMSKDEMPSLPTQL
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
70.4
39.7
Major BPS
75.8
0.64
1
65.8
41
Major PPT
80.8
0.69
0.9
86.7
24.5
Minor 5ss
47.5
-0.2
2.7
67.2
43.7
Minor BPS
56.1
0.27
1.6
69.56
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009685
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033119
123793868 - 123813461
19594
ENSAPLT00000010120
123793868 - 123811115
17248
ENSAPLT00000010051
123793868 - 123841768
47901