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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123803653_123804503_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
123803653 - 123804503
Intron Length:
851

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGAACC
5'SS Class:
major
3'SS Sequence:
TGATGCTGTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTACCT
Flanking Amino Acid:
VILPDSIRNYMSKFLSDKWM
Intron Amino Acid Position:
397

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
74.6
33.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
67.5
0.39
1.1
58.2
47.1
Minor 5ss
37.2
-1.5
3
50.1
39
Minor BPS
66.2
0.59
1.9
88.65
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009685
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033119
123793868 - 123813461
19594
ENSAPLT00000010120
123793868 - 123811115
17248
ENSAPLT00000010051
123793868 - 123841768
47901