Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12380568_12381035_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12380568 - 12381035

Intron Length:

468

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAACTGCT

5'SS Class:

strong_major

3'SS Sequence:

TATTTTCATTTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

CTATCTTTATTT

Flanking Amino Acid:

AKAFSKDLPRAVEILADIIQ

Intron Amino Acid Position:

150

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

1.1

78.8

35.5

Major BPS

100

1.24

0.5

100

Major PPT

79.6

0.67

0.8

78.9

34.4

Minor 5ss

40.9

-1

3.2

59.5

Minor BPS

63.5

0.5

1.6

76.15

41.3

Associated Gene:

Gene:

PMPCB

Ensembl Gene ID:

ENSAPLG00000012048

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017822

12378207 - 12385807

7601

ENSAPLT00000012557

12378207 - 12385867

7661