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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123806469_123807229_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
123806469 - 123807229
Intron Length:
761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAA
U12 Branch Point Sequence:
TCTTCGTAGACC
Flanking Amino Acid:
SKVIYKQFKQADNEASGGNV
Intron Amino Acid Position:
504

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
81.4
32.7
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
87.7
0.85
0.7
80.8
31.1
Minor 5ss
39.7
-1.2
2.9
51.2
45.7
Minor BPS
49.7
-0
2.4
69.25
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009685
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010120
123793868 - 123811115
17248