About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123806469_123809755_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
123806469 - 123809755
Intron Length:
3287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAAC
5'SS Class:
strong_major
3'SS Sequence:
ACTCTTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
AATTCTGTAACT
Flanking Amino Acid:
SKVIYKQFKQINLKDNLGKL
Intron Amino Acid Position:
504

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
81.4
32.7
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
83.5
0.75
0.8
81.1
30.2
Minor 5ss
39.7
-1.2
2.9
51.2
45.7
Minor BPS
65.3
0.56
2
83.43
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009685
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033119
123793868 - 123813461
19594