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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123807260_123809755_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
123807260 - 123809755
Intron Length:
2496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGCGTAAA
5'SS Class:
major
3'SS Sequence:
ACTCTTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
AATTCTGTAACT
Flanking Amino Acid:
ADNEASGGNVINLKDNLGKL
Intron Amino Acid Position:
514

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
72.2
34.3
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
83.5
0.75
0.8
81.1
30.2
Minor 5ss
28.7
-2.4
2.8
29.6
38
Minor BPS
65.3
0.56
2
83.43
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009685
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010120
123793868 - 123811115
17248