Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12381991_12382523_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12381991 - 12382523

Intron Length:

533

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTCTGTATG

5'SS Class:

major

3'SS Sequence:

CATCTTTGTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTAACAT

U12 Branch Point Sequence:

AGTAACATGACA

Flanking Amino Acid:

GPRIVLAAAGGVCHDELLDL

Intron Amino Acid Position:

243

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.5

0.58

1.3

74.4

41.9

Major BPS

53.2

0.08

1.3

63.4

42.8

Major PPT

78.2

0.63

0.9

76.5

37.2

Minor 5ss

40.8

-1

2.6

51.1

45.4

Minor BPS

47.7

-0.1

1.8

60.93

37.9

Associated Gene:

Gene:

PMPCB

Ensembl Gene ID:

ENSAPLG00000012048

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012557

12378207 - 12385867

7661

ENSAPLT00000017822

12378207 - 12385807

7601