Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12382637_12383150_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12382637 - 12383150

Intron Length:

514

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGCAGC

5'SS Class:

strong_major

3'SS Sequence:

TGTGCTCCCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTACAG

U12 Branch Point Sequence:

TCGCCCTACAGC

Flanking Amino Acid:

LPPCSFTGSEIRIRDDKMPL

Intron Amino Acid Position:

281

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.92

0.9

76.2

39.9

Major BPS

43.6

-0.4

1.5

52.3

Major PPT

72.4

0.5

0.9

65.3

36.3

Minor 5ss

39.7

-1.2

2.9

52.1

44.7

Minor BPS

42.3

-0.6

2.3

50.81

46.2

Associated Gene:

Gene:

PMPCB

Ensembl Gene ID:

ENSAPLG00000012048

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017822

12378207 - 12385807

7601

ENSAPLT00000012557

12378207 - 12385867

7661