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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123832324_123833564_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
123832324 - 123833564
Intron Length:
1241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACGCA
5'SS Class:
major
3'SS Sequence:
TTGAAATAAACAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTGAAAT
U12 Branch Point Sequence:
TCCCCAGTAACT
Flanking Amino Acid:
EIPNSHILDQYRNPSNPLAH
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
68.4
36.8
Major BPS
67.2
0.43
1.2
73.3
39.1
Major PPT
58.3
0.19
1.1
52.3
45
Minor 5ss
36
-1.6
3.4
47.9
47.8
Minor BPS
48.4
-0
2.3
70.32
46.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029470
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045752
123829790 - 123837584
7795