Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12383295_12383645_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12383295 - 12383645

Intron Length:

351

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGTGAA

5'SS Class:

strong_major

3'SS Sequence:

TCTCTTGCTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCAGAA

U12 Branch Point Sequence:

CTTTCAGAAAAT

Flanking Amino Acid:

NWDRSFGGGVQNLSSKLAQT

Intron Amino Acid Position:

329

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

75.5

28.7

Major BPS

64.9

0.37

37.5

Major PPT

82.7

0.74

0.8

80.6

31.5

Minor 5ss

26.7

-2.7

27.8

37.9

Minor BPS

43.9

-0.3

2.5

70.06

46.5

Associated Gene:

Gene:

PMPCB

Ensembl Gene ID:

ENSAPLG00000012048

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017822

12378207 - 12385807

7601

ENSAPLT00000012557

12378207 - 12385867

7661