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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123834683_123835090_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
123834683 - 123835090
Intron Length:
408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCTGG
5'SS Class:
major
3'SS Sequence:
CCTTCCCTCGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTGTGGTTAACC
Flanking Amino Acid:
KLKEKCPECKIIGVDPDGSI
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
63.4
43.8
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
66.9
0.38
1
67.2
26.5
Minor 5ss
45
-0.5
2.8
55.9
42.9
Minor BPS
55
0.14
2.4
73.81
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029470
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045752
123829790 - 123837584
7795