Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123835609_123837023_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

123835609 - 123837023

Intron Length:

1415

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTAAGCATC

5'SS Class:

strong_major

3'SS Sequence:

GGTACCCATCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACCCAT

U12 Branch Point Sequence:

TCTCCCAACATT

Flanking Amino Acid:

RLIREEGLLCGGSSGSAMSV

Intron Amino Acid Position:

249

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.5

0.77

76.5

39.2

Major BPS

64.5

0.36

1.2

72.7

34.4

Major PPT

62.9

0.29

51.7

42.9

Minor 5ss

44.4

-0.6

2.9

42.6

Minor BPS

-0.3

2.2

65.85

45.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029470

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045752

123829790 - 123837584

7795