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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123838535_123838689_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
123838535 - 123838689
Intron Length:
155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAACTATT
5'SS Class:
major
3'SS Sequence:
TGTTCCCTCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAA
U12 Branch Point Sequence:
TTTTGCAAAACT
Flanking Amino Acid:
YDQAPVVAESGLILGMVTLS
Intron Amino Acid Position:
467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.2
81.8
38.5
Major BPS
65.8
0.39
1.4
77.7
37.1
Major PPT
79.3
0.66
0.8
73.5
31.4
Minor 5ss
46.8
-0.3
2.7
60.7
43.8
Minor BPS
54.1
0.21
2.3
84.77
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009685
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010051
123793868 - 123841768
47901