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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_12385725_12385814_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12385725 - 12385814
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTTGT
5'SS Class:
major
3'SS Sequence:
CTTTAAATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
CTTTCTTTAAAT
Flanking Amino Acid:
YDKHPAVAAVGPIEQLPEYN
Intron Amino Acid Position:
467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
71.4
41.2
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
77
0.61
0.9
67.2
42.5
Minor 5ss
47.6
-0.2
2.5
58.3
46.4
Minor BPS
78.3
0.97
1.3
88.96
35.8

Associated Gene:

Gene:
PMPCB
Ensembl Gene ID:
ENSAPLG00000012048
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012557
12378207 - 12385867
7661