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Intron Name: Anas_platyrhynchos_platyrhynchos_1_123858273_123859249_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

123858273 - 123859249

Intron Length:

977

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAAGGAGA

5'SS Class:

strong_major

3'SS Sequence:

TGTGCTTCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTTAC

U12 Branch Point Sequence:

AGATGCTAAACT

Flanking Amino Acid:

QQSNELTMSDGAVVTITAPV

Intron Amino Acid Position:

367

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.8

0.73

42.1

Major BPS

74.2

0.6

39.4

Major PPT

79.7

0.67

0.9

73.5

Minor 5ss

32.1

-2

3.1

40.4

45.5

Minor BPS

52.7

0.16

2.1

72.08

44.4

Associated Gene:

Gene:

PKNOX1

Ensembl Gene ID:

ENSAPLG00000009259

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009662

123857314 - 123890232

32919