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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123862330_123864713_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
123862330 - 123864713
Intron Length:
2384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTTTC
5'SS Class:
strong_major
3'SS Sequence:
ATTGTATATGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTCTTTTAAAA
Flanking Amino Acid:
PGTIRIQNSQLQLQLNQDLG
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.8
80.1
28.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.6
0.53
1
67.4
42.5
Minor 5ss
45.4
-0.5
2.7
60.6
44.5
Minor BPS
69.4
0.6
1.3
77.65
32.3

Associated Gene:

Gene:
PKNOX1
Ensembl Gene ID:
ENSAPLG00000009259
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009662
123857314 - 123890232
32919