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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_123864812_123865300_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
123864812 - 123865300
Intron Length:
489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGCAC
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTCACTTACCT
Flanking Amino Acid:
QGNVTMATVAGGTVYQPVTV
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
65.7
40.1
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
82.1
0.72
1
87.2
30.4
Minor 5ss
37.1
-1.5
3.3
49.6
47
Minor BPS
65.8
0.57
1.8
86.76
38.6

Associated Gene:

Gene:
PKNOX1
Ensembl Gene ID:
ENSAPLG00000009259
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009662
123857314 - 123890232
32919